THE SCIENTIST VOLUME 8, No:7 APRIL 4, 1994 (Copyright, The Scientist, Inc.) Articles publi
THE SCIENTIST
VOLUME 8, No:7 APRIL 4, 1994
(Copyright, The Scientist, Inc.)
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NEWS
BIOTECHNOLOGY VIS-A-VIS HEALTH-CARE REFORM: United States
biotechnology industry executives and analysts are warning
that some components of proposed U.S. health-care reform
legislation designed to evaluate and influence drug pricing
will have a chilling effect on the willingness of companies
to pursue research as well as investor confidence and
support of the industry. Already, they say, decreased
investment and poor stock market performance have forced
many firms to cut back on investigations and scientific
personnel
PG : 1
AAAS MEETING IN REVIEW: The February meeting of the American
Association for the Advancement of Science in San Francisco
was marked by presentations and discussions on traditional
scientific subjects as well as a number of wide-ranging
science-in-society topics, such as science fiction's role in
the public's view of science, increasing drug resistance in
disease-causing bacteria, and ethical questions concerning
research on homosexuality. Included in a reporter's notebook
are some unusual--and even curious--moments that took place
both within and outside of the meeting rooms
PG : 1
NEW HUGHES INVESTIGATORS: Officials of the Howard Hughes
Medical Institute (HHMI) say that the latest crop of HHMI
investigators will include substantially more minorities and
women than in previous years. Some institute officials and
other observers say the new appointments correct a
longstanding imbalance in HHMI representation among these
groups
PG : 3
OPINION
REFOCUSING AIDS RESEARCH: Robert Root-Bernstein, an
associate professor of physiology at Michigan State
University, contends that our ignorance concerning AIDS is
profound and that significant progress in curtailing the
pandemic is possible only if the sources of this ignorance
are identified. He maintains that the first priority of the
new national AIDS task force is, therefore, to challenge the
validity of current theories about AIDS and to encourage the
asking of new questions.
PG : 1
COMMENTARY: Bench scientists in biotechnology companies have
a great stake in the outcome of President Clinton's
proposals for health-care reform, says Carl B. Feldbaum,
president of the Biotechnology Industry Organization.
Feldbaum warns, for example, that establishment of an
advisory council to evaluate new drug pricing is sure to
have a depressing effect on investment in the industry that
would translate directly into lost jobs for lab researchers
PG : 12
RESEARCH
1993 CITATION SURPRISE: A list of the 10 most cited papers
published and referred to in 1993 includes, as expected,
articles covering several fields in the life sciences, but
also contains a physical science paper on a superconducting
material
PG : 15
HOT PAPERS: An atmospheric physicist discusses the utility
of the HITRAN molecular database
PG : 17
TOOLS & TECHNOLOGY
PREVIEWING EXPERIMENTS: As a cost-saving method, more labs
are turning to the automated design-of-experiment approach--
a way of using statistical principles to identify crucial
variables in an experiment before it is conducted--and
utilizing available software to enable the process
PG : 18
PROFESSION
MENTORS AND MONEY FOR WOMEN: The Glaxo Women in Science
Scholar program provides annual stipends to female science
students, and, more important, pairs them with established
women researchers who act as mentors and role models as the
students pursue science
PG : 22
BLAS FRANGIONE AND ALLEN ROSES, a New York University
Medical Center pathologist and a Duke University Medical
Center neurologist, respectively, have each received the
Metropolitan Life Foundation Award for Medical Research
PG : 23
SHORT TAKES
NOTEBOOK PG : 4
CARTOON PG : 4
LETTERS PG : 12
CROSSWORD PG : 13
EXPERIMENT DESIGN AND STATISTICAL SOFTWARE PRODUCTS
DIRECTORY
PG : 20
NEW PRODUCTS PG : 21
OBITUARY PG : 23
----------
WE WELCOME YOUR OPINION. IF YOU WOULD LIKE TO COMMENT
ON THIS STORY, PLEASE WRITE TO US AT EITHER ONE OF THE
FOLLOWING ADDRESSES:
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U.S.A.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
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NEXT:
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TI : Agenda For U.S. AIDS Research Is Due For A
Complete Overhaul
AU : ROBERT S. ROOT-BERNSTEIN
TY : NEWS
PG : 1
A recent front-page article in The Scientist (F. Hoke,
"National AIDS Task Force Expected To Accelerate Drug
Development," Feb. 7, 1994, page 1) reported that a newly
formed, United States government-backed, 15-member panel
intends, among other things, to improve communication
between pharmaceutical and biotech companies and thus speed
development of AIDS-combating antiretroviral drugs and
vaccines.
One wonders, on one hand, what is wrong with the U.S. drug
industry that such facilitation should be necessary and, on
the other, whether an AIDS task force can, in fact, do
anything that the industry is not already doing. The task
force, it seems to me, has better things to do.
In trying to imagine a more appropriate research agenda for
the panel, I find myself making three idealistic and naive
(and, possibly, incorrect) assumptions: (1) that it has been
formed to push AIDS research--not politics--forward; (2)
that among its members are the equivalents of J. Robert
Oppenheimer (to protect its mission, as he did with the
Manhattan Project, against external influences) and Richard
Feynman (to say, as he did in the Challenger inquiries, what
needs to be said in moments when stark reality confronts
us); and (3) that it is willing to put the lives of people
with AIDS ahead of political correctness, patronage, and
economic advantage.
I hope that my assumptions are correct, but I wonder. The
fact that we still can neither treat AIDS effectively nor
cure it strongly suggests that we do not understand it. I
maintain that we have not yet asked all of the right
questions about AIDS, and that our ignorance is therefore
profound. Identifying the sources and types of our medical
ignorance thus becomes the highest research priority.
A model program for accomplishing this has been developed by
Marlys and Charles Witte, two AIDS researchers in the
department of surgery at the University of Arizona Medical
School, and a colleague of theirs, medical philosopher Ann
Kerwin. According to their model, ignorance comes in four
forms, each of which must be addressed as we pursue our
research on AIDS:
* First, there are the things we think we know, but that we
really do not. This is ignorance masquerading as knowledge.
* Second, there are the things that we know we do not know.
This is overt ignorance.
* Third, there are the things that we do not know that we do
not know. This is hidden ignorance.
* Finally, there are the things we think we do not know but
we really do. This is hidden knowledge masquerading as
ignorance.
Examples of each can readily be found in our current
approach to studying AIDS, and, in my opinion, it is the job
of the AIDS task force to identify and remedy as many of
them as possible.
False Assumptions
An example of something we thought we knew, but did not, is
that the human immunodeficiency virus (HIV) is the direct
cause of T-cell killing in AIDS. Even such formerly stalwart
proponents of this notion as Anthony Fauci and Robert Gallo
now admit that this is not the case. Virtually all HIV
research is now focused on finding "indirect" mechanisms by
which HIV may cause immune suppression.
We also thought we knew that HIV alone is sufficient to
cause AIDS. But such researchers as Luc Montagnier, Shyh-
Ching Lo, Joseph Sonnabend, and many others--including me--
now believe that cofactors are necessary and, therefore,
that HIV by itself cannot cause AIDS.
We used to think we knew that everyone is at equal risk for
HIV and AIDS, and that a heterosexual epidemic was
inevitable. But the epidemiology of AIDS has yet to prove
consistent with that view. There is no record of tertiary
(non-risk group to non-risk group) sexual transmission of
AIDS in any Western country. Indeed, every study of female
prostitutes in Western countries has led to the conclusion
that those among them who do not use drugs intravenously
have almost no risk of HIV infection and that evidence of
female prostitutes acting as vectors for spreading HIV into
the heterosexual population is, at best, inconclusive.
We thought we knew that people in all AIDS risk groups
proceed to AIDS at the same rate following HIV infection,
but this also has turned out to be untrue. For young
hemophiliacs, for example, the average time is more than 15
years, while for older hemophiliacs and homosexual men, the
time to AIDS is 10 years. People who have acquired HIV
through blood transfusions have a rate nearly double that of
gay men (average onset at six years), but people who become
HIV-infected during an organ transplant or cancer
chemotherapy develop AIDS, on average, in only two or three
years.
We thought we knew that HIV always precedes immune
suppression in people who develop AIDS. But many studies
show that lymphocyte counts are as low in some HIV-negative
gay men, intravenous drug users, and hemophiliacs as they
are in nonsymptomatic HIV-positive people--and sometimes
lower.
We thought we knew that public health measures to combat
AIDS--"safe sex," clean needles for addicts, and so forth--
work because they interrupt HIV transmission. But
epidemiologic studies have shown that transmission of all
suspected infections that may act as cofactors in AIDS is
also interrupted. We do not know, therefore, why public
health measures work.
Other aspects of AIDS dogma have also been challenged-- many
of them in the last year. For example, we now have evidence
raising fears that current vaccines, designed to spur
antibody production, may be useless or even detrimental; we
have been told that significant percentages of hemo-
philiacs have beaten HIV and seroreverted without resorting
to antiretroviral therapies; and, most recently, the very
poor efficacy of AZT has been revealed to us.
If such important, and previously obvious, "facts" are now
called into question, we must seriously consider how many of
our remaining notions about AIDS are similarly biased by our
preconceptions and are, therefore, not trustworthy.
A basic role that the AIDS task force must perform, then, is
to make sure that, even to the point of discomfort, we are
constantly skeptical and inquiring about the things we think
we know--but really do not.
Hard Questions
The things we know we do not know are much more obvious than
the things we think we know but do not. For example, we know
that we do not know how HIV causes immune suppression. We
are not even sure that HIV is sufficient to cause AIDS
without other immunosuppressive cofactors, since it is a
documentable fact that no one who gets AIDS has HIV as his
or her sole immunosuppressive risk.
Although every person with AIDS has a variety of autoimmune
complications, even including antibodies against his or her
own T-cells, we know that we do not know what role these
play in AIDS. Indeed, we do not know what triggers any human
autoimmune disease, whether in AIDS or as a factor in other
syndromes. We do not know, in consequence, whether treating
HIV will be sufficient to cure AIDS, or whether AIDS may
continue to destroy the body through autoimmune mechanisms
even after the virus is eliminated.
We know that alcoholism, crack cocaine use, and non-IV use
of heroin greatly increase the risk of contracting HIV. But
there have been no telling studies of the lifestyle or
immunologic function of alcoholics, crack cocaine users, or
non-IV heroin addicts at risk for AIDS, nor of the
mechanisms by which these people acquire their HIV (and
other) infections.
Do crack users, for example, share the very high rates of
sexually transmitted diseases, malnutrition, and bacterial
and viral infections that characterize IV-drug users and
cause immune suppression in them? Do sores in the mouth
associated with crack cocaine use and oral sex with HIV-
positive partners facilitate HIV transmission? Do people who
use non-IV drugs participate more often in unprotected anal
intercourse (the most efficient way to transmit AIDS
sexually) than other people? Does intercourse during
menstruation increase the probability of heterosexual
transmission of HIV? Do disease conditions that are
associated with immune suppression--such as diabetes,
dialysis, anabolic steroid use, anorexia, and bulemia--pose
additional risks for contracting HIV? We do not know the
answers to any of these fundamental questions.
We must address all of these matters--the things that we
know we do not know--and many others if we are to succeed in
defeating AIDS. The AIDS task force should therefore
promote, as one of its highest priorities, the investigation
of every anomalous and unexpected observation that threatens
the sanctity of the current AIDS dogma.
`Crazy Hypotheses'
The things we do not know that we do not know are, of
course, the most difficult forms of ignorance to identify.
And to go about identifying them we must invent crazy
hypotheses and do unthinkable experiments. I advocate this
approach not because we can expect these hypotheses or
experiments to work, but because the history of science
shows that employing them is the most successful research
strategy for addressing the unknown.
The notebooks of the great biomedical scientists--Jenner,
Pasteur, Fleming, Blumberg, and so forth--reveal a record of
failed theories and botched experiments that ultimately led
to unexpected results. In disproving an incorrect theory or
in running an experiment for which there was no sound,
establishment-validated rationale, these clever scientists
encouraged serendipity, the wellspring of scientific
insight. On accepting his 1976 Nobel Prize in physiology or
medicine, Baruch Blumberg said: "I could not have planned
the investigation at its beginning to find the cause of
hepatitis B. This experience does not encourage the approach
to research which is based exclusively on goal-oriented
programs."
The programmatic, rationalistic converse of the Blumberg
approach is much more common, of course. But we must bear in
mind the number of times that supposedly well-founded
approaches to disease have turned out to be harmful.
Physicians in the 19th century "knew" that germs did not
cause disease; it took a physical chemist named Pasteur,
working outside of the medical community, to prove
otherwise. It is just these things that make sense--but are
wrong--of which we must beware; and we can beware only if we
control every theory by testing it against alternative
theories that we do not expect to be correct. Sometimes we
will be surprised, and--by being surprised--we will discover
our ignorance about things we did not know we did not know.
To nurture our curiosity and thus broaden our opportunities
for serendipitous discovery, I suggest that we cut back
funding to those animal models and test-tube studies that do
not behave like human AIDS and, instead, put more effort
into modeling what really happens in human beings. No one,
for example, has ever mimicked in an animal the entire range
of immunosuppressive agents that bombard a blood-transfusion
patient: anesthetics; surgery; multiple blood transfusions
contaminated not only with HIV but also with
cytomegalovirus, Epstein-Barr virus, and hepatitis C virus;
opiate analgesics; and high-dose antibiotics. No one has yet
modeled such IV-drug-user risks as multiple, concurrent
infections with sexually transmitted diseases; bacterial
infections from unclean needles; constant re-exposure to
alloantigens (blood, lymphocytes, tissue) on unclean
needles; persistent drug addiction; chronic antibiotic use;
and malnutrition. No one has repeatedly reinoculated
chimpanzees or macaques rectally with semen containing HIV,
herpes viruses, and mycoplasmas, while concurrently exposing
them to inhalant nitrites, antibiotics, and other drugs, as
has typified so many men and women who have contracted AIDS
sexually.
So another of the functions that the AIDS task force must
take on is to make sure that no assumption goes
unchallenged, and to provide sufficient freedom for
nonconformist research that might well yield serendipitous
surprises. Let's start with messy reality instead of
assuming that HIV is the entire answer.
Hidden Knowledge
Finally, there are the things that we do know, but we think
we do not. Most important, we think that we do not know of
any cure for AIDS at present, but, really, we do. That there
is a cure is clearly evident all around us--the hundreds of
documented cases of people who have been infected with HIV,
who have developed T-cell deficiencies, and who have
subsequently returned to a normal immunologic status, lost
all signs of HIV, and remain healthy. There are people who
have had antibody to HIV for more than 10 years who display
no signs of immunologic damage. And there are those rare
cases of people who have had full-blown AIDS for more than a
decade and are still alive.
These people are living proof that there are things about
AIDS that we do not know we know; they are walking data
banks, waiting to be tapped, waiting to reveal to us the
knowledge that we possess but are unaware of. We need to
uncover the hidden knowledge that is within our reach by
studying these people to find out whether the strains of HIV
that have infected them are nonpathogenic and therefore
protective against pathogenic strains; whether they are
genetically different from other human beings; or whether
they have treated themselves differently and so hold the
clues to treatment of other HIV-infected people.
Limited formal studies and much anecdotal evidence suggest
that no seroreverters and very few long-term survivors of
HIV have been treated with retroviral drugs; most have
drastically altered their lifestyles to eliminate ongoing
immunosuppressive risks, including re-exposure to HIV and
other sexually transmitted diseases; they have ceased drug
use; and most have adopted high-nutrition diet supplements
to boost immune function.
These people may be telling us that we know how to treat
AIDS successfully through risk elimination and immunologic
boosters rather than antiretrovirals or HIV vaccines. One
reason we do not know that we know this is because these
people have succeeded by ignoring mainstream medical advice,
and their knowledge is therefore outside the structure of
biomedical science. I suggest that whatever these survivors
know must be combined with what the world of official
biomedical investigation knows and become a focal point of
AIDS research as soon as possible. We must refocus AIDS
research on seroreverters, long-term survivors of HIV
infection, and long-term survivors of AIDS.
Of course, we must also place whatever knowledge we get in
such unorthodox ways back into a standard scientific form:
What we do not know that we know tends to be expressed in
terms of anomalies--things that do not fit our expectations-
-and are therefore generally overlooked or ignored. The AIDS
task force should pursue studies involving these survivors
and see how much of AIDS can be prevented by focusing on
cofactors.
An Open Field
Recognizing the extent of our scientific ignorance of AIDS
leads me to conclude that we have narrowed our focus too
precisely. AIDS is more complex than just HIV. It includes
everything that predisposes people to HIV infection,
everything that can synergistically work with HIV once
present, and everything that can cause immune suppression in
people at risk for AIDS independently of HIV. Recognizing
this increased complexity does not displace HIV from its
place at the center of AIDS research, but it does provide a
wide range of new targets for prevention and treatment.
The useful function that an AIDS task force can play is to
make sure that the utmost reaches of our ignorance are
quickly and efficiently identified. We will not do that by
staying in the rut that has been gouged out during the past
decade, but rather by deviating from it.
A diversity of opinion and of research has never hurt
science. Dogmatism and politically motivated programs often
have. The AIDS task force can foster one or the other, but
not both.
Robert S. Root-Bernstein, an associate professor of
physiology at Michigan State University, East Lansing, is
the author of Rethinking AIDS: The Tragic Cost of Premature
Consensus (New York, Free Press, 1993) and Diversity
(Cambridge, Mass., Harvard University Press, 1989). He is a
former MacArthur Fellow (1981-1986).
----------
WE WELCOME YOUR OPINION. IF YOU WOULD LIKE TO COMMENT
ON THIS STORY, PLEASE WRITE TO US AT EITHER ONE OF THE
FOLLOWING ADDRESSES:
garfield@aurora.cis.upenn.edu
71764.2561@compuserve.com
The Scientist,
3600 Market Street, Suite 450, Philadelphia, PA 19104,
U.S.A.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
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TI : Fear Of `De Facto' Price Controls Forcing Cuts In
Biotech Innovation, Officials Say
With health-care reform proposals threatening financial
prospects, firms are shelving projects, laying off
researchers
AU : SUSAN L-J DICKINSON
TY : NEWS
PG : 1
The biotech industry is marshaling its forces for what many
of its executives view as the political fight of its life.
Financial analysts and other observers agree with the
executives, saying that the industry faces financial threats
posed by various mechanisms in President Clinton's health
plan designed to influence drug pricing. These observers
warn that such mechanisms, if legislated, would result not
only in the loss of promising drugs, but also in significant
declines in the biotech work force--thus dealing a major
blow to the industry overall. Particularly ominous, they
contend, is a Clinton-plan proposal for an advisory council
that would evaluate the pricing of certain new drugs.
Already, the concerned sources point out, the proposed
legislation has prompted reluctance among venture
capitalists to risk biotech investments, which, in turn, has
forced some biotech firms to lay off employees, freeze
expansion plans, and put entire lines of research on hold.
"The fear of the advisory board is heads and shoulders over
any other concern" currently facing biotech companies, says
Lisa Conte, chief executive officer of South San Francisco,
Calif.-based Shaman Pharmaceuticals Inc. "It's terrifying,
and it could destroy this industry."
At the center of the controversy are two mechanisms included
in the Clinton health plan by which government could
influence the pricing of drugs. One is the establishment of
a Department of Health and Human Services (HHS) advisory
council on breakthrough drugs--drugs that either treat
previously untreatable conditions or are the first effective
therapeutics against a disease--that would review
introductory prices for these therapeutics, and publicize
its disapproval of any price.
Another would give the HHS secretary the power both to
blacklist certain drugs from Medicare reimbursement if
government-required rebates on drug prices proposed by a
company are deemed unacceptable by the secretary, based in
part on the findings of the new council. In addition, the
proposed health-care legislation would require drug
manufacturers to pay special rebates to Medicare on new
drugs for cancer, AIDS, and other diseases, also based in
part on the advisory board's review.
The Clinton administration has insisted, both in meetings
with the biotech industry and in press reports, that these
components of the proposed health-care legislation do not
constitute price controls, as the council's reviews of the
drugs are nonbinding, and their findings could be used only
to regulate prices in the case of Medicare reimbursements.
The administration has also professed that it wants to work
with the industry in support of its important technology.
Repeated calls by The Scientist to White House and health-
plan task force officials were not returned.
Biotech industry officials are claiming--and their
assertions are supported by many industry analysts--that the
proposed legislation constitutes de facto price controls
because insurance companies and the public will balk at
paying prices the council may criticize. They also say that
fear of the legislation's impact is already having a
detrimental effect on investment in biotech. "It's just
price controls by a different name, and it is recognized as
such by our investors," says Conte.
In fact, several market statistics indicate that since
January 1993, when the president first intimated that some
form of government evaluation of drug prices would be
included in his health-care reform plan, investors have been
moving away from biotech stocks, analysts say. Vector
Securities International Inc. of Deerfield, Ill., reports
that the total assets in health-care mutual funds--which
might be inclined to invest in drug or biotech companies--
dropped throughout 1993, from $4.3 billion at the beginning
of the year to $3.6 billion at the end, in part because of
the proposals. And Michael Celano, accounting firm Arthur
Andersen & Co.'s partner in charge of its Philadelphia
office of life sciences, says that the number of biotech
initial public offerings (IPOs) fell from 43 in 1992 to 25
in 1993. Those that were financed were offered at a
harmfully discounted rate, in part because of fear of the
health-care proposals, he says.
Other biotech officials report similar situations. Shaman's
Conte, for example, saw her company's stock price plummet by
almost 50 percent, from $15 for its IPO in January 1993 to
$8.50 for its secondary offering, held in early December.
And Mitchel Sayare, CEO and chairman of Cambridge, Mass.-
based ImmunoGen Inc., says his company closed on an offering
in mid-February 1994 at $7 per share--this after an IPO
price in 1989 of $10 and an intermediate high price of $19.
"I have been out there on the street, trying to get a deal
done," Sayare reports. "And it is extremely difficult.
Paying for the innovation we are working on here already
represents a serious challenge."
Mitigating Factors
Biotech officials concede that other factors have
contributed to stock devaluation throughout the industry
over the past year. Two highly publicized clinical trial
failures--of Malvern, Pa.- based Centocor Inc.'s Centoxin
and Boulder, Colo.- based Synergen Inc.'s Antril--acted to
depress biotech stock prices in early 1993, as did decreased
earnings at industry leader Amgen Inc. of Thousand Oaks,
Calif. But investors and analysts also say that the specter
of price controls is making them wary. "It's a negative
factor, and a reasonably big one," says Skip Klein, a
health-care analyst with T. Rowe Price Associates Inc. in
Baltimore.
Sayare explains that when his investors originally decided
to put their money into biotech, there were essentially
three risks: technology (whether or not the products would
work); regulatory hurdles (getting the products approved by
the Food and Drug Administration); and the market (having
the products accepted in a competitive marketplace). "What
the investors see now is that there is a fourth risk," he
says. "And that is that ImmunoGen will not be able to set
prices for its drugs that it needs to recover its costs and
to provide our investors with a fair return."
Drug manufacturing has always been a high-risk business. A
study conducted at Tufts University over two decades and
released in 1991 found that the odds that a drug entering
clinical testing will actually reach the market are about
one in five; and a recently completed Duke University report
revealed that only 30 percent of marketed drugs actually
recoup their R&D cost. "If you are going to ask investors to
take that kind of risk," says Steve Push, a spokesman for
Genzyme Corp. of Cambridge, Mass., whose stock price
plummeted 39 percent last year, "you have to offer rewards
commensurate with that risk."
"Innovation requires investments in terms of both human and
financial capital," observes Gregory Brown, vice president
of Vector Securities. "And that capital will flee if there
is no possibility of return."
Research Woes
Against the backdrop of this political and economic debate,
research projects and the scientists who perform them within
this industry are being negatively affected. Two recent
surveys conducted by the Biotechnology Industry Organization
(BIO) found that 44 percent of companies specializing in
cancer research and 47 percent of firms working primarily on
AIDS have already had their work delayed or curtailed
because of capital constraints. Forty- one percent and 40
percent of cancer and AIDS companies, respectively, cite
what they term the administration's proposed "de facto"
price controls as the dominant reason for their lack of
capital; and 62 percent and 63 percent, respectively,
predict further restrictions on research if the legislation
is passed.
Michael Fung, senior scientist at Tanox Biosystems in
Houston, says that, owing to lack of financing, in part
because of investor uneasiness over the proposed
legislation, his company hasn't been able to take its lead
product, antibody AIDS-439, into clinical testing as
planned. "The compound is literally sitting in the
refrigerator, waiting," he says. "The longer we wait, the
greater the possibility that the antibodies will
deteriorate, and all of the effort will go down the drain."
Thomas J. McKearn, CEO and cofounder of Princeton, N.J.-
based Cytogen Corp., saw his company's stock drop $23 per
share in 1993, for a total of $370 million in lost value.
McKearn says the firm had to cut back both on staff and
projects: In September, 58 people were laid off, 83
positions were eliminated, and R&D personnel was reduced by
40 percent. Three phase I studies for cancer imaging agents
were canceled.
William H. Rastetter, president and CEO of IDEC
Pharmaceuticals Corp. in San Diego, says he has been forced
to make a similar decision: IDEC's lead compound, IDEC-C2B8,
is in pilot phase II studies for B cell lymphoma, and the
company believes that it could also be therapeutically
beneficial in leukemia and myeloma. But it's on hold
indefinitely. "If our stock were at [$]15 or [$]20, we would
be in phase I trials for these conditions [leukemia and
myeloma] now, and our product might get to market sooner for
these patients," Rastetter says. "But given the current
financial environment, we can't do the trials." IDEC went
public in September 1991, garnering a value of $15 per
share. Today each share is worth around $6.
At Waltham, Mass.-based ImmuLogic Pharmaceutical Corp.
president and CEO Richard Bagley says that, although his
company's market valuation has held up thus far, his R&D
decisions are nonetheless being driven by the negative
environment. He has moved both staff and financial resources
from longer-term efforts in the area of autoimmune disease
to work with allergy drugs that are closer to clinical
testing. Before the health plan was proposed, ImmuLogic
established a discovery research group that today is staffed
at only one-third the original target level, Bagley says.
"Money is needed for clinical trials," he says. "We'd better
be prudent."
Rastetter says he is frustrated over, essentially, being
forced to manage in a short-sighted manner, focusing money
and energy on development, to the detriment of research: "If
companies in the sector had better access to capital today,
the pipeline of innovative health-care products would
undoubtedly be richer seven to eight years from now."
Executives also say they are aware of the negative impact
these decisions are having within the companies' labs. Fung
talks about the frustration he and his fellow scientists
feel at having their promising project put on hold, and says
that Tanox is already finding it more difficult to attract
excellent, experienced scientists. "They want more security
about their future," he says. "People are hesitant to commit
their careers to a company that has had to cut its budget."
McKearn says the aftermath of laying off one-third of
Cytogen's work force has been like dealing with a death. "It
is just as agonizing for the people who are left," he says.
"There is an intense period of grieving, and morale is on a
roller coaster for quite a while afterward."
At ImmunoGen, head of research Walter Blattler describes the
difficulty even in putting a project on hold for a while and
redirecting the efforts of his scientific staff away from
their primary interests. "How do you explain to a scientist
that his or her project is no longer important?" he asks. "I
have worked hard to give our people intellectual ownership
of their projects; now I have to take that away. It's not
easy."
Killing The Cure
Biotech industry officials say their ultimate concern is
that if research is cut, cures will not be found. "The irony
is that in the name of health-care reform this legislation
will render the patients the ultimate losers," Rastetter
says. "If you cut innovation, you are doomed to using older
technologies."
The Clinton administration's focus on pricing of
"breakthrough" drugs is at the heart of their worries.
"Having an advisory panel on breakthrough drugs really urges
companies to go into generics," or products that offer only
incremental increases in therapeutic value, says BIO
president Carl Feldbaum. "It's counterproductive, and anti-
innovation." A number of industry analysts point out that
the proposal is the opposite of one that is spurring
research investment in Japan. There, they say, a government-
dictated pricing structure rewards innovation by setting
prices for innovative drugs often at two to three times
prices paid in the U.S.; the longer a drug is on the market,
the lower the price it is awarded.
Feldbaum says he has been told by one person involved in the
design of the legislation that the health-care task force's
concern was the power any company that came up with a cure
for AIDS or other currently incurable disease would have to
charge any price for its product. "Our response to such a
concern," says Feldbaum, "is that the problem is not that
there is a cure for AIDS, the problem is that there is not a
cure for AIDS. If you squelch R&D on just breakthrough
drugs, you are going to postpone or prevent the day that
there will be one."
BIO and a number of industry executives are proposing an
alternative to the advisory board, one which relies on the
Department of Public Health's existing-outcomes research
group to evaluate drug prices. "This office is already
collecting information on outcomes research--how a given
treatment or drug compares with options for a specific
disease," Feldbaum says. "We are urging that the health-care
alliances have the ability to access that information, and
determine for themselves what price they are willing to pay.
We are confident that, on such a basis, biotech drugs will
be able to compete."
Biotech executives and analysts say that the market is
already demanding pharmacoeconomic studies and cost-
effectiveness data on promising compounds. "Cost-
effectiveness is one of the critical issues of the future,"
says Sarah Gordon, biotech analyst for Amerindo Investment
Advisors Inc. in New York. "Today I'm much more careful to
get detailed analysis about how a company is going to
evaluate cost-effectiveness [of its product], and I look to
have those measures built into the phase III trials."
Industry officials and analysts are insisting that free-
market pressures, not political ones, are the way to keep
drug prices in control. "The market is already correcting a
lot of the failings that the Clinton plan is trying to
address," says Vector Securities' Brown. "The market is
correcting it by demanding that new technologies prove
themselves cost-effective. We don't need a regulator to tell
us to do that."
Susan L-J Dickinson is a freelance writer based in
Philadelphia.
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================================
NEXT:
------------------------------------------------------------
TI : Reporter's Notebook: AAAS Meeting In San Francisco
Offered Mix Of Hard Science, Social Ramifications
AU : FRANKLIN HOKE
TY : NEWS
PG : 1
According to the American Association for the Advancement of
Science (AAAS), precisely 4,148 scientists, students, and
others concerned about "Science and a Changing World"--this
year's theme--attended the group's 1994 meeting, held
Friday, February 18 through Wednesday, February 23, in San
Francisco. The meeting also drew well from Washington, D.C.,
science-policy circles, with Harold Varmus, head of the
National Institutes of Health; Neal Lane, director of the
National Science Foundation; and Rep. George Brown, Jr. (D-
Calif.), chairman of the House Science, Space, and
Technology Committee, among those participating. John H.
Gibbons, chief of the Office of Science and Technology
Policy, gave the keynote address.
As is customary at the annual AAAS meeting, a wide variety
of current science-and-society topics were addressed in the
sessions. Among these were: the dangers posed by the rapid
spread of drug resistance in disease-causing bacteria, the
role of science fiction in presenting science to the public,
and the ethical questions raised by recent research showing
that some men may be genetically predisposed to
homosexuality.
Following is an account of several of the meeting's more
interesting--sometimes curious--moments, taken from this
reporter's notes:
When speaking in public, scientists--like politicians and
others--often use metaphors, parables, and quotations to add
that down-to-earth feeling or touch of erudition, as needed.
Keynote speaker John Gibbons was exemplary in this regard,
incorporating the thoughts of philosopher Machiavelli, poet
Edna St. Vincent Millay, political thinker Antonio Gramsci,
and others into his talk Friday evening, along with several
vivid images and informal tales.
In one combined flurry, Gibbons began by describing the
federal deficit as a "wild card" in science-policy
deliberations. A physicist by training, Gibbons paused to
recall learning the laws of thermodynamics in graduate
school using another card-game metaphor: You can never win,
you always lose, and you can't even get out of the game. On
the deficit--and society's unwillingness to face it
squarely--he quoted Bertrand Russell's observation that
mankind would rather commit suicide than learn arithmetic.
Gibbons then pursued the topic of deficit spending with his
two-part "theory of holes": "If you're in one, stop
digging," and "If the hole is deep enough, you have to find
a way to climb out." Finally, to bring the deficit point
home, Gibbons quoted economist Herb Stein: "That which
cannot go on forever must come to an end."
While waiting for a Saturday morning session called "The
Changing Work-face: Women, Men, and the Dynamics of
Inclusion," two married women scientists discussed their
lives in the laboratory.
"When I was in graduate school 12 years ago, discrimination
was out in the open, where you could see it," said one to
the other. "People now, I think, don't understand it so
clearly."
Conversation continued on the difficulty of being a female
scientist and of balancing a research career with domestic
obligations.
"Well, just by being in science, you break one rule," the
first woman said. "But by having a relationship, you break
another."
The difficulties faced by these two are, it would seem,
emblematic of certain societal shifts. In the session,
Cornell University sociologist Henry A. Walker spoke of the
dramatic rise this century in the representation of women in
the workplace. He made the further point, however, that
while single women formerly dominated this group, the
biggest statistical change since World War II has been in
the number of married women and women with children going to
work. Almost three-fifths of working women are married now,
and women with at least one child between the ages of six
and 17 are more than two and one-half times as likely to be
at work now as in 1950.
A somewhat alarmed lunchtime crowd listened on Saturday as
Rockefeller University microbiologist Alexander Tomasz
detailed the possible collapse of biomedicine's antibiotic
arsenal. Multi-drug resistance in disease-causing bacteria
is on the rise worldwide, Tomasz said. The genes for
resistance, he explained, do not necessarily arise first in
dangerous bacteria, but often appear in harmless bacteria
and are then transferred among species. Among the innocuous
bacteria acting as such "arms dealers" in resistant genes,
Tomasz said, might be mouth or gut bacteria "with which we
have no quarrel, but who have witnessed the entire host of
antibiotics" and have thus developed defenses against those
drugs. Of the roughly two dozen antibiotic agents available
to combat pneumonia, only two are still effective against
resistant strains, Tomasz noted--and the resistance genes
for those drugs are already present in other microbes.
"A post-antibiotic era in which control of microbial disease
would be lost again is no longer science fiction but a very
real possibility," Tomasz wrote in an abstract of his work.
Perhaps in search of a time slot that would not place him in
competition with any other meeting event, George Brown held
a wide-ranging 7:30 A.M. news conference on Sunday.
Continuing his crusade to ferret out and eliminate pork-
barrel science projects, Brown said he is considering
legislation that would prohibit institutions that receive
research funding congressionally earmarked for a specific
project from also receiving any NSF funding. It was not
immediately clear how such a link could be legally
established or enforced, and reporters' questions on the
subject failed to elicit substantial details.
In discussing the superconducting supercollider, now
destined for dismantling following Congress' refusal to fund
the project last year, Brown noted, "There will be a lot of
unemployed high-energy physicists for a while, because there
just aren't enough jobs for them.... They may have to go
into low-energy physics or something."
Midway through the six-day session, the scientific
deliberations were enlivened by a chilling article in the
Sunday edition of the San Francisco Examiner: "Death and
hideous destruction engulfed the Bay Area in its full horror
at first light this morning," the article began. "The long-
feared but widely disregarded `Big One,' an earthquake
registering 7.5 on the Richter scale, roared to life along
the Hayward Fault at 2:32 A.M. Sunday, causing more damage
than any temblor in California history ...."
The frightening story ran under a three-inch-high banner
headline reading "Deadly Denial." Beneath the headline, in
small type, was a disclaimer line: "A major earthquake could
strike the Bay Area next week or 15 years from now. When it
does, this is the kind of story that will be published."
According to an Examiner reporter, the story was written to
draw public attention to the dangers posed by the Hayward
Fault, smaller than some other regional faults but running
through densely populated Northern California areas.
On the other hand, San Franciscans can rest assured that
their city will be around for many years to come, according
to Natalie Foster, an associate professor of chemistry at
Lehigh University in Bethlehem, Pa. Her proof? Twenty-
fourth-century cadets, as portrayed on the television show
"Star Trek: The Next Generation," train at Star Fleet
Academy--located in a still-standing San Francisco.
Foster spoke at a Sunday morning session titled "The Science
in Star Trek: Bringing Science to a Different Public." She
used two "Star Trek" episodes, one from the 1960s progenitor
of "The Next Generation" and one from the current series, to
point up what she sees as an attitudinal sea change among
biomedical scientists in the intervening decades--years
marked by researchers' frustration with cancer and AIDS. The
episodes ("The Deadly Years" [1967] and "Unnatural
Selection" [1989]) both concern premature aging.
As the medical team struggles to understand and cure the
disease in the first episode, a young doctor named Janice
Wallace tells Capt. James T. Kirk, "We know the problem; we
know the progress of the affliction. Therefore, once we find
the proper line of research, it is only logical that we find
a solution." And, indeed, a cure is found by episode's end.
In the second episode, the doctors are dealing with a
different challenge, the accidental result of a research
experiment gone wrong. Here, also, a cure is found. But
during the search, the entire crew of a starship, the U.S.S.
Lantree, dies, as do several other people.
The doctor of the U.S.S. Enterprise, Katherine Pulaski, in
her record of the case, writes: "Scientists believe no
experiment is a failure, that even a mistake advances the
evolution of understanding. But all achievement has its
price. For one brief glimpse of the mysterious blueprint of
human evolution, the men and women of the U.S.S. Lantree
paid with their lives. Their sacrifice is thus noted in this
scientist's log."
With life-sized cardboard cutouts of current "Star Trek"
officers Cmdr. William T. Riker and Lt. Cmdr. Geordi LaForge
beside her, Foster said, "I'd like you to contrast that
statement of Dr. Pulaski's--`all achievement has its price'-
-to Janice Wallace's very confident statement in the
1960s.... Those two quotes, in themselves, underscore the
tremendous confidence we had in the 1960s, both as a nation
and as scientists, that once we knew the problem, we could
solve it. Kate Pulaski is much more circumspect--`all
achievement has its price.' That's risk-benefit analysis.
And you'll have to agree that's one of the big differences
between the 1960s and the 1990s in science."
Social, ethical, and scientific perspectives on biological
research into sexual orientation were discussed at a Monday
morning news conference organized by the National
Organization for Gay and Lesbian Scientists and Technical
Professionals (NOGLSTP). Speakers at the conference included
sociologist Pepper Schwartz from the University of
Washington, Seattle, and Dean Hamer, senior researcher at
the National Cancer Institute. Schwartz, a researcher on
human sexuality, is also the immediate past president of the
Society for the Scientific Study of Sex, Mount Vernon, Iowa.
Hamer and his research team published findings last summer
showing a link between specific DNA markers on the X
chromosome and homosexual orientation in some men,
suggesting a genetic predisposition in their sexuality
(Science, 261:321-7, 1993). Both Schwartz and Hamer
expressed hope that such research into the possible genetic
bases for aspects of sexuality will not be misinterpreted or
misused.
According to Schwartz, psychologists speak of an
"intolerance of ambiguity" in sexuality, which can lead to
misunderstandings of findings such as Hamer's. Even granting
a predisposition to homosexuality, Schwartz says, there
remain many sociological and psychological influences on
sexuality, as well as more diversity in sexuality than is
generally accepted.
"People don't want a range of sexuality," Schwartz said.
"They want to be something or the other, particularly in
societies that demand it.... We seem to be overwhelmed with
the power of homosexuality, so that we reify in that
direction in the same way we do in racist societies, where
we say that if somebody has any of the stigmatized color in
their biological background, that's the color they are, as
opposed to the ratio of colors they might be. ... In our
society, one homosexual experience...is likely to reify you
in that direction rather than in any other.... There may be
different kinds of homosexuality, some of which may be more
hard-wired than others."
"As we come closer to actually finding genes that are
involved, the ethical quandaries are made much more real,"
Hamer said. For instance, he said, there are concerns that
the military, insurance companies, or others might develop
blood tests for sexual orientation that they might use
without people's permission. Amniocentesis tests might be
developed that could lead to a situation where expectant
mothers might abort fetuses that they fear may be
homosexual.
"My own position is very straightforward," Hamer said. "That
would be wrong, unethical, and a terrible abuse of the
research."
After a seven-year effort by NOGLSTP members, the AAAS
council voted on Tuesday to recognize the group as an
affiliate. NOGLSTP, founded in 1980, has about 200 members
currently. Rochelle Diamond, a laboratory manager for two
biology labs at the California Institute of Technology,
heads the group.
----------
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================================
NEXT:
------------------------------------------------------------
TI : Hughes Institute Moves To Bolster Female And
Minority Participation
AU : KAREN YOUNG KREEGER
TY : NEWS
PG : 3
Among the 44 scientists--triple the usual number of new
nominees--expected to be named Howard Hughes Medical
Institute (HHMI) investigators, 20 are women and six are
members of minority groups, say institute officials.
According to an HHMI spokesman, African Americans, Native
Americans, and Hispanics are among the represented ethnic
minorities, but the number of women included in this
minority group was unavailable at press time.
Institute officials say the number of new female appointees
for this year will nearly double the current roster of 25
women who are HHMI investigators. At the same time, the
total number of minority scientists will increase from three
to nine. The new investigators will join an existing body of
225 United States researchers, which includes five Nobel
laureates and 21 members of the National Academy of
Sciences.
At press time, Purnell Choppin, president of the Chevy Case,
Md.-based philanthropy, had declined to release names of the
new appointees, since, a spokesman explained, details of
"the employment process" had yet to be finalized for all of
them. According to the spokesman, publication of the list--
which would reveal the identities of the new women and
minority researchers--was expected by April 1.
Choppin and other HHMI officials say that their organization
made a conscious effort to recruit underrepresented groups
of scientists in this latest expansion. Says Choppin: "We
indicated [in the nomination solicitation] that we were
interested in having outstanding women and minorities
nominated .... I am gratified that this took place." He
notes, however, that quality of research--rather than
consideration of race or gender--was the main attribute for
selection.
HHMI solicited nominations from biomedical institutions from
around the country. The 44 appointees were then selected
from this group by a review panel of eminent researchers.
Corrective Measure
To some HHMI officials and other observers, the
unprecedented focus on women and minorities serves to
correct a past imbalance. Applauding the move, for example,
is Shirley Tilghman, a professor of molecular biology at
Princeton University and a Hughes investigator for the past
five years. Tilghman, who is a forceful advocate for women
in science, says there was room for improvement by HHMI in
this area. (According to an HHMI spokesman, only nine women
were among the 83 scientists hired by HHMI from 1990 through
early 1994.) Commenting on the new group of appointees,
Tilghman adds, "I think some really excellent scientists
will be recognized."
Also praising the institute's selections is N. Maxwell
Cowan, a neuroscientist and vice president-chief scientific
officer at HHMI. Cowan says he has been concerned about the
underrepresentation of women and minorities since he started
at HHMI six years ago. The institute "has made great strides
towards rectifying this," says Cowan, describing the current
effort as "affirmative action in the very best sense of the
word."
And Irving S. Shapiro, chairman of the HHMI board of
trustees, says that selecting women and minorities brings a
"broader diversification of people" to HHMI research, as
well as a better representation "of the population of our
country than we have had in the past."
A Bumper Crop
The group of appointees to be named is notable for its size
in addition to its makeup, since the 44 appointees is triple
the number of scientists that HHMI is in the habit of
bringing on each year. From 1988 to 1992, for example, the
institute hired about 16 new investigators annually. The
current crop of 44 investigators was harvested from a field
of 287 nominees, says Cowan.
"The competition was extremely steep," he says. "Being among
those nominated is in itself a mark of distinction."
"We're delighted," says Choppin, "at a time when
opportunities [for discovery] are great and when funding is
tight overall that we're able to increase our activities."
He explains that an outstanding return on HHMI's endowment
investment allowed for "the current jump forward" in
funding.
HHMI, the largest private philanthropy in the U.S. (with
1993 assets greater than $8 billion), spent $268 million on
biomedical research in 1993. This is more than 21 percent of
the total support for biomedical research in the U.S. from
nonprofit groups, according to HHMI.
For Princeton's Tilghman, the take-home message of the
expansion is that there has been a major injection of
funding for biomedical research. She lauds HHMI's policy of
supporting individual researchers rather than, like the
National Institutes of Health and other organizations,
specific research projects. This investment in people,
Tilghman says, "is a critical part of [HHMI's] success." She
says that this approach to funding biomedical research lends
value and importance to the independent, free-thinking
aspects of scientific inquiry.
Young Blood
Choppin says that this year's anticipated appointments
reflect the institute's interest in encouraging and
supporting younger talent. Scientists, he explains, can
become HHMI investigators at one of three levels--assistant,
associate, and full--a structure that roughly corresponds to
the professorial structure of universities. Each level has a
progressively longer period of review for renewal--three
years for assistant, five years for associate, and seven for
full investigators.
In the current round of appointments, Choppin says, there
are more assistant investigators nominated than at any other
rank. "We have been encouraging more nominations at the
assistant level, but not to the exclusion of senior-level
ranks," he adds. Nevertheless, Shapiro points out, the
latest group of investigators poses more opportunities for
young researchers who, in his words, "have the potential to
be great scientists."
According to institute officials, as a result of the latest
round of appointments, the number of institutions that have
HHMI laboratories will increase from 53 to 63 and,
consequently, the national research staff supported by HHMI
(now nearly 2,000 people) will increase substantially.
The names of these laboratories will not be made public,
however, until all of the individual appointments have been
announced.
QUID PRO QUO
When scientists accept a nomination to become Howard Hughes
Medical Institute (HHMI) investigators, they become
employees of HHMI, receiving full financial support for
salary, staff, and equipment in renewable appointments of
three, five, or seven years.
However, HHMI investigators--who conduct their work at
universities and medical centers across the United States--
still maintain their institutional appointments. Under a
collaborative agreement between these institutions and HHMI,
investigators must spend 75 percent of their time doing
research, while the other 25 percent can be devoted to
activities such as teaching, mentoring graduate students,
and serving on committees.
In return, the investigators receive support for themselves,
research technicians, and post- doctoral fellows. HHMI also
pays for administrative services and laboratory overhead and
supplies.
--K.Y.K.
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================================
NEXT:
NOTEBOOK
------------------------------------------------------------
TI : Healthy Dialogue
TY : NEWS (NOTEBOOK)
PG : 4
The National Institutes of Health is presenting a free,
nine-week series of "easy-to-understand, entertaining, and
informative" lectures about the basics of biomedical
research for the general public. Sessions--which began March
31 and take place on consecutive Thursday evenings until May
26 at NIH headquarters in Bethesda, Md.--are to cover a
range of topics including alternative medicine, the biology
of aging, and toxicology. A lineup of well-known speakers is
planned. For example, Harold Varmus, NIH director, will
teach a class on cancer, and Francis Collins, director of
the National Center for Human Genome Research, will discuss
genetics. Contact NIH at (301) 402-2828 for more
information.
----------
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(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : Human Rights--Via E-mail
TY : NEWS (NOTEBOOK)
PG : 4
The American Association for the Advancement of Science
(AAAS) invited Liu Gang, the 32-year-old physicist
imprisoned for his role in the nonviolent Chinese democracy
movement of 1989, to attend its annual meeting in San
Francisco in February. When no response came, C.K. Gunsalus,
chairman of the AAAS Committee on Scientific Freedom and
Responsibility and associate vice chancellor for research at
the University of Illinois, Urbana-Champaign, wrote Chinese
Premier Li Peng on February 16, just before the start of the
meeting, to express the concern of her group over Liu Gang's
fate. Still no response. So, at the meeting in San
Francisco, the AAAS committee--in cooperation with the
Committee of Concerned Scientists, an independent group of
scientists monitoring human rights--circulated a petition
addressed to Li Peng and other Chinese officials protesting
"inhumane conditions of internment" for Liu Gang and other
scientists being held for nonviolent political offenses.
Meanwhile, the AAAS group has also inaugurated an E-mail
Human Rights Action Network (HRAN) for scientists interested
in helping persecuted colleagues around the world. To join
the network, send the message "SUBSCRIBE AAASHRAN firstname
lastname" to the Internet E-mail address
"listserv@gwuvm.gwu.edu".
----------
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(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : Top Banana
TY : NEWS (NOTEBOOK)
PG : 4
According to Keith Bezanson, president of the Ottawa,
Canada-based International Development Research Centre, a
new fungus-resistant breed of banana bearing the name
"Goldfinger" could "save the world's banana export industry
from collapse as diseases take an unsurmountable toll." The
new hybrid, says Bezanson, owes its creation to years of
research in selective breeding aimed at developing a
replacement for currently popular banana varieties--such as
the Cavendish--that are plagued by pesticide-resistant
fungal diseases. Goldfinger was developed by a team from the
Honduran Foundation for Agricultural Research in La Lima,
Honduras. Its hardiness, say developers, means that it can
be grown without pesticides, a plus for the environment and
farmers in the developing countries where it will be
planted.
----------
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(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : SSC Yard Sale
TY : NEWS (NOTEBOOK)
PG : 4
Now that funding for the superconducting supercollider (SSC)
has been scrapped by Congress, the Department of Energy and
the Texas National Research Laboratory Commission are
soliciting suggestions for what to do with the assets
remaining at the Waxahachie, Texas, site. The existing
facilities and equipment are: extensive cryogenic facilities
and superconducting tooling and test equipment; the 550,000-
square-foot central facility, which includes office and lab
space, a machine shop, and a liquid helium refrigerator;
buildings for the linear accelerator and its negative
hydrogen ion source; and an integrated network of
distributed computer workstations. Expressions of interest
in the facilities are due April 15. Only those who submit
this material will be eligible for grants. For information,
contact the DOE SSC Project Office at (214) 708-2414.
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(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : Learning About Learning
TY : NEWS (NOTEBOOK)
PG : 4
The New York-based Charles A. Dana Foundation recently
announced the formation of a new consortium to identify the
role of brain dysfunction in language-based learning
disabilities (L/LD). Backed by a three-year, $2.3 million
grant, the researchers at five universities will work on
developing methods for early diagnosis of L/LD, using
imaging techniques to pinpoint the sources of neural
dysfunction and to develop treatment strategies for the
disorders. L/LD, which is said to affect at least 7 percent
of children in the United States, is characterized by a
difficulty in learning to speak (developmental dysphasia),
followed by reading problems (developmental dyslexia).
Members of the consortium include Rutgers University,
Newark, N.J.; Harvard Medical School; New York University
Medical Center; University of California, San Francisco; and
Washington University School of Medicine in St. Louis.
----------
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(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : New Gynecology Journal
TY : NEWS (NOTEBOOK)
PG : 4
The Society for Gynecologic Investigation, headquartered in
Washington, D.C., has issued the first volume of an
international quarterly, the Journal of the Society for
Gynecologic Investigation, published by New York-based
Elsevier Science Inc. Rogerio A. Lobo of the University of
Southern California Women's Hospital in Los Angeles is
editor-in-chief. For information, contact: Cheryl Kahan,
Marketing Manager, Elsevier Science Inc., P.O. Box 882, New
York, N.Y. 10159; (212) 633-3922.
----------
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(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : A Global Warming Mystery
TY : NEWS (NOTEBOOK)
PG : 4
Popular theories of global warming center on the notion that
burning fossil fuels adds carbon dioxide (CO2) and other
gases to the Earth's atmosphere in quantities greater than
plants and forests can absorb--with the accumulating layer
of gases drastically altering climate patterns. But
geologists have uncovered evidence that, millions of years
ago, CO2 levels were more than 16 times higher than they are
now, while the Earth's temperature was cooler. Their
findings are based on studies of goethite, a hydrogen-
bearing iron oxide that is 440 million years old. A specimen
found in a tropical area by a team led by Crayton Yapp, a
University of New Mexico professor of earth and planetary
sciences, indicated high levels of CO2, as well as a coolish
73-degree average temperature for the region. The evidence
coincides with indications of continental ice sheets forming
at the time as well as a massive extinction described by
paleontologists for the period. According to the New Mexico
scientists, the discovery seems to show that global warming
effects may be more complex than simply high levels of CO2,
and that by reconstructing past changes, scientists may more
accurately predict such future phenomena as global warming.
Yapp warns, however, that "we try to solve mysteries, but
many of the clues have been destroyed by nature itself."
----------
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(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
COMMENTARY
------------------------------------------------------------
TI : Bench Scientists Had Better Pay Attention To The
Threats Posed By Health-Care Reform
AU : Carl B. Feldbaum
TY : OPINION (COMMENTARY)
PG : 12
I fear that bench scientists in biotech companies may be
taking the current debate over health-care reform much too
casually. They may be thinking that, aside from how the
outcome will affect the cost of their own individual
insurance coverage, the matter is something that only people
in Washington, D.C., need to care about.
Well, if they feel that way, they're wrong. Already, health-
care reform is having a damaging impact on the scientific
work force--and the implications for the future are even
more threatening.
The CEOs of two small biotech firms and I recently met with
the editorial board of the Baltimore Sun. During the
meeting, one of the executives explained that, like 99
percent of United States biotechnology companies, his
enterprise had no products yet on the market. Without
earning revenues from sales, and certainly without profits,
his company relies on private venture capital and potential
stock offerings to finance its research. Uncertainty about
price-control provisions in various health-care reform
proposals--including President Clinton's--have driven
investors away in droves.
Their reasoning? "The science is tough enough," they say,
"and then you have to get through years of clinical trials
and FDA approval. Now you're telling us there's going to be
some faceless government bureaucrat at the end of the whole,
long process to tell you what price to set? We look at the
bottom line, the return on our investment. We'd do better
investing in the computer industry or in fast food or any
other industry with a more promising return on investment!"
The result? The biotech CEO I mentioned was recently forced
to lay off 15 employees--all bench scientists. This sort of
cutback is becoming common these days and represents a
bitter irony.
Shouldn't health-care reform promote and support, rather
than suppress, the innovative research necessary to create
therapies and cures for various cancers, cystic fibrosis,
multiple sclerosis, Alzheimer's, AIDS, and countless other
diseases and conditions? And isn't it individual
researchers, after all, who constitute the backbone of any
biotech firm's product-development efforts?
Unfortunately, the various health-care reform proposals
currently before Congress could very well establish
impenetrable barriers between biotech companies and the
capital they need to continue their work and maintain their
staffs at full level.
As things stand now, President Clinton's health-care reform
program would create an advisory council empowered to
evaluate the "reasonableness" of new drug pricing. While the
council wouldn't be able actually to set prices, it could
publicly voice its disapproval of a particular drug's price,
and the Secretary of Health and Human Services would be able
to "blacklist" it from Medicare coverage. The depressing
financial impact that such a practice would have on a
biotech enterprise's return on investment is obvious. And
the consequent impact on the bench-scientist work force
should be obvious as well: Since most of the 1,300 biotech
companies in the U.S. have fewer than 75 employees, and less
than 1 percent of these companies have products on the
market, they have very few ways to reduce costs besides
laying off employees.
The growing threat presented by health-care reform is
exacerbating the economic situation for small biotech
companies. Dried-up capital markets are now forcing biotech
firms to curtail research and clinical trials. A survey
taken by the Biotechnology Industry Organization late last
year showed that almost half of its member companies
conducting AIDS research had to slow down their efforts
because of a lack of available capital. Another survey in
February of this year, focusing on cancer research, showed a
similar pattern. Given such work force reductions, it is
likely that patients suffering from AIDS, cancer, and other
diseases may have to wait even longer than the current seven
to 18 years generally needed to bring new drugs or therapies
to market.
I presume it is clear that less research means fewer
researchers. Still another survey--released last month by
the Gordon Public Policy Center of Brandeis University--
showed that nearly 70 percent of biotech companies polled
would be further forced to cut research and development if
the Clinton plan or something similar were enacted.
To me, it is unjust and wholly inappropriate that the
biotech sector should be put to the sword. While current
health-care reform proposals paint the drug industry as the
bad guy, drugs make up only 7 percent of all health-care
costs--and biotech drugs represent only 3 percent of that 7
percent. Furthermore, prices of most biotech drugs--which
are less expensive in the U.S. than they are abroad--have
never been raised since their launch dates.
As the health-care debate evolves through Congress, all
Americans should ask themselves why excellence and medical
advancement should not be compatible with universal
coverage. We should also consider whether it is wise or just
that innovative scientists--of all people--are turning out
to be casualties of the reform movement.
Please keep your eyes open--and your guard up--as this
situation unfolds.
Carl B. Feldbaum is president of the Biotechnology Industry
Organization (BIO), a Washington, D.C.-based national trade
association for the biotech industry.
----------
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(Copyright, The Scientist, Inc.)
================================
NEXT:
LETTERS
------------------------------------------------------------
TI : Basic Research Support
AU : Wells E. Farnsworth
TY : OPINION (LETTERS)
PG : 12
Recently, in The Scientist ("Scientists Should Make Sure
They Give NIH Proper Credit For Funding Their Research,"
Nov. 15, 1993, page 12), Samuel C. Silverstein, Frank W.
Fitch, and John D. Loike made the critically important
observation that not only the general public but also
members of Congress grossly undervalue government-supported
basic biomedical research for two reasons.
First, they reported, investigators fail to credit National
Institutes of Health sponsorship of their work. Second, they
noted, researchers do not clearly communicate the
significance and utility of their basic findings to the
advancement of medicine, the environment, or the economy.
Sen. Barbara Mikulski (D-Md.), for example, views basic
science efforts as "curiosity-driven activities," which she
equates with pork. Members of Congress fail to see that
usable concepts arise, as do oaks from acorns, through
development and nurture of new, at first unappreciated,
ideas.
Little wonder that the current administration, in its plans
for funding health research initiatives, is shifting
priorities away from basic biomedical research, which has
been America's source of justified pride, to pragmatic
"preventive research" and "health service research." Both
these efforts feed on what we have done but stifle
continuation of theoretical progress.
The following three ideas may help stop this erosion of the
image of the research establishment:
1. Investigators must aggressively communicate their
findings in an intelligible and wholly honest manner to the
general public and to Congress. As Mary Woolley, president
of Research!America, stresses in her address entitled "The
Public's View of Federal Support for Medical Research" (The
Physiologist, 36:53, 1993), we must be advocates.
2. People must be aware that almost all the advances that
have sustained our preeminence in biomedicine have been made
possible by the tax dollars provided by NIH and the high-
quality work that this institution ensures.
3. Besides reaching out to the public as advocates of
research, we must be sure that we in the profession are
aware of the worth and innovation of those outside our ivory
tower. While we are indebted to The Scientist for providing
this currency, especially through its "Hot Papers" section,
I suggest that the publication include acknowledgment of the
source of support of all these projects.
So informed, each can be a credible advocate of the work of
others and a champion of their support.
WELLS E. FARNSWORTH
Adjunct Professor
Northwestern University
Medical School
Tarry Building 11-715
303 E. Chicago Ave.
Chicago, Ill. 60611-3009
----------
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(Copyright, The Scientist, Inc.)
================================
NEXT:
RESEARCH
------------------------------------------------------------
TI : 1993's Top 10 Papers: Superconductor Report
Surfaces In Sea Of Genetics
AU : KAREN YOUNG KREEGER
TY : RESEARCH
PG : 15
Following a well-established pattern, papers in the field of
gene research dominated the list of hottest articles in
science for 1993--as determined by citation analysis. It is
noteworthy, however, that a physical science report
describing a new superconductor placed in a list of the 10
most cited papers published and referred to last year.
Based on data compiled by the Philadelphia-based Institute
for Scientific Information (ISI), a listing of the most
frequently cited papers covered topics in molecular biology,
genetics, and other life science specialties.
Life science papers, say ISI analysts, generally tend to
gain far more citations, on average, than papers in physics,
chemistry, or other fields. This is partially attributable
to the comparatively greater number of published papers and
researchers in life sciences, as well as the higher average
number of articles they cite.
As a result, more than half of the "hottest" papers of 1993
related directly or indirectly to molecular genetics, as
reported earlier this year in ISI's newsletter Science Watch
(G. Taubes, 5[1]:1, January 1994), which used ISI's "Hot
Papers" database to come up with its tallies. The newsletter
focused on papers describing original research, not review
articles.
The list that the newsletter published contained 37 papers,
each of which had gathered at least 24 citations by the end
of the year.
Of the 10 most cited papers (see accompanying table), six
fall, broadly speaking, into the category of gene research.
Three of these articles (Nos. 3, 7, and 8) describe the role
of various proteins in the signal-transduction pathway of
cells and how this ultimately relates to oncogenesis. Two
other papers identify a genetic cause for amyotrophic
lateral sclerosis (ALS), commonly known as Lou Gehrig's
disease (No. 1), and X-linked agammaglobulinemia (No. 6).
Among the top 10, the remaining gene research paper (No. 9)
covers the role of the p53 tumor suppressor gene in
genetically programmed cell death. The other papers in the
top 10 discuss the activity of HIV during the AIDS latency
period (Nos. 2 and 4) and adult respiratory distress
syndrome (No. 10).
Other life science papers in Science Watch's report
encompassed such diverse subjects as the identification of
carbon monoxide as a putative neural messenger; a genetic
linkage analysis in familial breast and ovarian cancer;
genetic mapping of human colorectal cancer; and the
isolation of a candidate gene for Menkes disease.
Also placing quite high in the rankings was a physical
science paper describing the discovery and properties of a
new mercury-bearing superconductor (No. 5 on the
accompanying table).
Leading The Pack
The most frequently cited 1993 paper was an article from the
March 4 issue of Nature. The 33 collaborators in this
research, working at 13 institutions, report that mutations
in copper/zinc-binding superoxide dismutase (SOD1)--an
enzyme that normally prevents cellular damage from highly
reactive chemicals such as superoxide--are associated with
familial ALS.
Until now, the cause of ALS--a fatal neurodegenerative
disorder of motor nerve cells of the spinal cord, brain
stem, and cortex--has been unknown, although about 10
percent of the cases are inherited through a dominant gene
on a non-sex chromosome, say ALS researchers.
"It's an amazing breakthrough in that this is the first
signal that we're getting in terms of what could be causing
the disease," says Daniel Rosen, a molecular biologist at
the Day Neuromuscular Research Laboratory at Massachusetts
General Hospital in Charlestown, and first author on the ALS
paper.
"We think the value of this research is that it points to a
pathophysiological mechanism [for ALS] ... We believe that
it is possible that free radical damage could be the cause
for the damage" seen in ALS patients, says Rosen. Free
radicals--highly reactive atoms or groups of atoms, mostly
oxygen--attack cellular constituents such as membrane
lipids, proteins, and nucleic acids.
This research "represents the first definition of a
biochemical defect that can cause this disease" in the more
than 120-year history of ALS research, notes Rosen. He
explains that the research described in the 1993 Nature
paper builds on past work at Massachusetts General, which
was directed by Robert Brown, Jr., head of the Day lab.
One of the reasons that this paper is so heavily cited might
be that researchers are using this information to look into
possible therapies and drugs to fight ALS, surmises Rosen.
He says that, because of the research in this report, a new
avenue of investigation in terms of clinical investigations
and therapy has opened up.
According to Rosen, this breakthrough comes none too soon
for the ALS research community. "There's a great deal of
helplessness associated with it [ALS]," he says.
"The patient slowly withers away and the physician feels
impotent in terms of being able to treat them....
There's a general desire to find some straw that people can
grab onto which would provide an answer for this disease,"
Rosen continues.
This discovery may also have implications for solving the
mysteries surrounding other neurological conditions, such as
Parkinson's disease, says Rosen. "There may be a common
mechanism in neurological diseases that involve free
radicals," he adds, although no experimental evidence yet
exists to link diseases like Parkinson's to free radical
scavenging.
Best Of The Rest
The second- and fourth-most-cited papers address the
recently discovered activity of HIV in the lymph node during
the latency period of AIDS. Both studies found that lymphoid
organs function as major reservoirs for the virus, even
during the asymptomatic phase of AIDS. Because the extent of
viral activity in infected people has been underestimated up
to now, say AIDS researchers, these papers point to the
importance of studying infection early in the course of the
disease.
The "general picture is that these changes [in how HIV
affects cells of the lymph node] not only allow us to
understand the viral pathogenesis, but they are allowing us
to understand the major progression [of AIDS]," says
Giuseppe Pantaleo, a researcher at the National Institutes
of Health's National Institute of Allergy and Infectious
Diseases in Bethesda, Md., and an author on the second-most-
cited paper.
Ashley Haase, a microbiologist from the University of
Minnesota, Minneapolis, and an author of the fourth-most-
cited paper, concludes that "the two big messages [from
paper No. 4] are that there is massive covert infection that
establishes a reservoir to perpetuate infection" and that
there are a "large number of cells that are capable of
producing virus at any given time and [are capable of making
a] substantial dent in the immune system."
Haase explains that a covertly infected cell contains the
viral genome, but has no external evidence of infection such
as detectable viral proteins or messenger RNA. As far as the
immune system is concerned the cell is not infected, but
carries the potential to infect, he adds.
Both Pantaleo and Haase say that a major implication of
these discoveries is that quite early in the course of AIDS
much damage to the immune system has already occurred, which
has important ramifications for AIDS therapy.
"The idea is that you'd want to come in very early in the
disease with very effective anti-retrovirus therapies" to
limit the size of the reservoir, says Haase. However, he
says, finding effective therapies is still a problem and the
body could build up a resistance to drugs like AZT if used
early on, making the fight against later opportunistic
infections more difficult.
"I'm actually somewhat optimistic about vaccines," says
Haase, explaining that the initial infection might involve
relatively small numbers of infected cells so we "might be
able to make a huge dent with a vaccine that is only partly
efficacious."
The third-most-frequently cited paper describes the
identification of the SH3 binding domain, a 10-amino-acid
long region found on many types of proteins, including
kinases, Ras activators, and transcription factors.
Ruibao Ren, a postdoctoral fellow in the laboratory of David
Baltimore at Rockefeller University, and first author of the
paper, explains that "SH3 appears in many important
proteins, including many types of oncogenes.... Their
binding sites involve other proteins which are mostly all
involved in signal transduction," a series of steps whereby
information from outside a cell is passed, or transduced,
via protein-protein interactions, to the cell nucleus where
genes are activated.
Because information like this controls basic cellular
functions such as growth, immune response, and
differentiation, Ren describes the importance of this paper
as "real-ly finding the key to how proteins interact ... now
people can understand the mechanism of how normal signals
are transduced and how, during oncogenesis, normal signals
get derailed."
Ren attributes the high frequency of citations of this paper
to two factors. He explains that because SH3 domains are
ubiquitous, the identification of the SH3 domain will guide
other researchers in their tests to determine whether the
proteins they have isolated contain an SH3 binding domain.
In addition, he says that SH3 binding domains will
"eventually serve as a target for pharmaceutical treatments
to block aberrant pathways," in cancerous cells, for
example.
Superconductor Surprise
An unexpected entry on the top 10 list is the fifth-most-
cited paper, a physical science report by a Russian-French
team that describes the discovery of a mercury-containing
copper oxide superconductor. Massimo Marezio, an author on
the paper and a physicist with a dual appointment as
director of research at the Laboratoire de Cristallo-graphie
in Grenoble, France, and a member of the technical staff at
AT&T Bell Laboratories in Murray Hill, N.J., explains the
impact of this paper: "At the beginning [the new
superconductor] looked like just another compound"; however,
"a posteriori, its chemistry looked very interesting because
of the specific crystal chemistry of the mercury cations."
"Because it is much simpler [than other superconductors],
from the structural point of view" he says, we "can study it
more easily than more complicated [superconductor] systems,
thus providing a simpler model for theorists" who study the
properties of superconductors.
For now, Marezio describes the potential for practical
applications of the superconductor as "promising ... but
we are still in the preliminary stages." He attributes the
report's high number of citations to the new compound's
"physical properties, not its applications."
The authors of these highly cited papers all say that they
are continuing the lines of research described in the 1993
reports--the Day lab team is conducting genetic analyses to
identify other ALS genes; Pantaleo's group is studying
infection mechanisms of HIV during the earliest and latest
stages of AIDS; Hasse's group is investigating aspects of
host immunity; Ren and colleagues are characterizing other
SH3-containing proteins; and Marezio and associates are
studying pressure effects on the mercury-containing
superconductor.
----------
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(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : TEN MOST CITED PAPERS FOR 1993
TY : RESEARCH
PG : 15
Rank Paper Citations
1 D.R. Rosen, et al., "Mutations in Cu/Zn 54
superoxide dismutase gene are associated
with familial amyotrophic lateral sclerosis,"
Nature, 362(6415):59-62, 1993.
2 G. Pantaleo, et al., "HIV infection is 53
active and progressive in lymphoid tissue
during the clinically latent stage of
disease," Nature, 362(6418):355-8, 1993.
3 R.B. Ren, et al., "Identification of a 47
ten-amino acid proline-rich SH3 binding site,"
Science, 259(5098):1157-61, 1993.
4 J. Embretson, et al., "Massive covert 43
infection of helper T lymphocytes and
macrophages by HIV during the incubation
period of AIDS," Nature, 362(6418):359-62,
1993.
5 S.N. Putilin, et al., "Superconductivity at 41
94 K in HgBa2CuO4+d," Nature, 362(6417):
226-8, 1993.
6 D. Vetrie, et al., "The gene involved in 40
X-linked agammaglobulinemia is a member
of the src family of protein-tyrosine kinases,"
Nature, 361(6409):226-33, 1993.
7 T. Sollner, et al., "SNAP receptors implicated 39
in vesicle targeting and fusion," Nature,
362(6418):318-24, 1993.
8 C.A. Lange-Carter et. al., "A divergence in 33
the MAP kinase regulatory network defined
by MEK kinase and raf," Science,
260(5106):315-9, 1993.
9 A.R. Clarke, et al., "Thymocyte apoptosis 33
induced by p53-dependent and independent
pathways," Nature, 362(6423):849-52, 1993.
10 R. Rossaint, et al., "Inhaled nitric oxide 32
for the adult respiratory distress syndrome,"
New England Journal of Medicine, 328(6):
399-405, 1993.
Source: ISI's Hot Papers Database, 1993
----------
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(Copyright, The Scientist, Inc.)
================================
NEXT:
HOT PAPERS
------------------------------------------------------------
TI : ATMOSPHERIC PHYSICS
TY : RESEARCH (HOT PAPERS)
PG : 17
L.S. Rothman, R.R. Gamache, R.H. Tipping, C.P. Rinsland,
M.A.H. Smith, D.C. Benner, V.M. Devi, J.-M. Flaud, C. Camy-
Peyret, A. Perrin, A. Goldman, S.T. Massie, L.R. Brown, R.A.
Toth, "The HITRAN molecular database: Editions of 1991 and
1992," Journal of Quantitative Spectroscopy and Radiative
Transfer, 48:469-507, 1992.
Laurence S. Rothman (Air Force Geophysics Directorate,
Phillips Laboratory, Hanscom Air Force Base, Mass.): "Most
molecules have strong absorption features in the infrared
and microwave region of the spectrum. The HITRAN database is
a compilation of fundamental parameters of molecular
transitions that permit users to identify and make
quantitative determinations of transmission and radiance
through atmospheric, laboratory, or other gaseous
environments. Advances in sensor technology, high-resolution
spectrometers, and computer power have enabled excellent
discrimination of background sources, such as smokestack
effluents through long-path observations.
"More than 30 gases, including their principal isotopic
variants, have been archived as a result of high-resolution
experimental and theoretical efforts. The database now
contains almost three-quarters of a million transitions
(each transition consisting of 100 bytes of information
concerning basic properties such as resonant frequency,
intensity, and quantum identification) from the millimeter
region to the visible portion of the electromagnetic
spectrum. In addition, cross-sections of anthropogenic
gases, such as the chlorofluorocarbons, have been archived.
The HITRAN program has above all been a major effort in
directing, coordinating, and validating massive amounts of
data.
"The HITRAN database is recognized as the international
standard in spectroscopy. It has been used for extensive
military and civilian applications, including remote
sensing, laser beam propagation, atmospheric modeling, and
fundamental laboratory research. Remote sensing, global
climate modeling, and pollution monitoring are currently
among the most prevalent applications. Remote sensing
applications from ground-based instrumentation and from
satellite platforms have matured into a major endeavor that
drives the development of the HITRAN database.
"HITRAN has also recently become available on a convenient
medium for the user: compact optical disk. Thus, there are
now a vast number of users who have migrated their spectral
analyses from mainframes to desktop computers."
----------
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================================
NEXT:
------------------------------------------------------------
TI : CELL BIOLOGY
TY : RESEARCH (HOT PAPERS)
PG : 17
P. Dent, W. Haser, T.A.J. Haystead, L.A. Vincent, T.M.
Roberts, T.W. Sturgill, "Activation of mitogen-activated
protein kinase kinase by v-Raf in NIH 3T3 cells and in
vitro," Science, 257:1404-7, 1992.
Paul Dent (Department of Medicine, University of Virginia
Health Sciences Center, Charlottesville): "Investigators in
signal transduction want to understand in detail the
molecular steps by which growth factors, hormones, and
oncogenes regulate cell function. Much of this control is
via protein phosphorylation. MAP kinase is activated by dual
phosphorylation at tyrosine and threonine residues,
occurring in a TEY motif, catalyzed by a protein-
tyrosine/threonine kinase termed MAP kinase kinase, or MEK
(MAP kinase/ERK kinase). MAP kinase kinase (MKK) is
remarkably specific for MAP kinase as the protein substrate
and is itself regulated by serine/threonine phosphorylation.
"At the time we initiated these studies, the activating
kinase for MKK had not been identified. Several clues
suggested that it was worthwhile to test the ability of v-
Raf to phosphorylate and activate MKK. Similar stimuli
activate Raf and MAP kinase, and both appeared to function
downstream from p21 Ras, inferred from studies by K.W. Wood
and colleagues (Cell, 68:1041-50, 1992; Hot Papers, The
Scientist, July 12, 1993, page 15) of the ability of a
dominant-negative mutant of p21 Ras to inhibit their
activation in PC12 cells in response to nerve growth factor.
"Because the mechanism of activation of c-Raf was unknown,
but the truncated oncogenic protein is arguably active (or
else cells would not be transformed), we studied activation
of MKK in NIH 3T3 cells transformed with v-Raf. We found
that MKK was activated constitutively in these cells and
that either v-Raf partially purified from the cells or a
GST-v-Raf fusion protein from E. coli phosphorylated and
activated MKK in vitro. These results strongly implied that
MKK is a physiological substrate for Raf. John Kyriakis, Ulf
Rapp, and Joe Avruch (from Harvard University and the
National Cancer Institute) independently demonstrated that
c-Raf immunoprecipitated from stimulated cells activated MAP
kinase kinase (Nature, 358:417-21, 1992). Other MKK
activators have also been identified.
"The discovery that MKK is a Raf substrate has been rapidly
followed by exciting discoveries from several labs. Ras
binds tightly to the regulatory domain of Raf, implying that
Ras may directly participate in Raf activation. MAP kinase
is translocated to the nucleus and regulates transcription
of c-fos. Through the efforts of many, we now understand
most of the steps in a signal transduction cascade from the
cell membrane to the nucleus."
----------
WE WELCOME YOUR OPINION. IF YOU WOULD LIKE TO COMMENT
ON THIS STORY, PLEASE WRITE TO US AT EITHER ONE OF THE
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U.S.A.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
TOOLS & TECHNOLOGY
------------------------------------------------------------
TI : Experiment Design Software: Better Data, Less Work
AU : CAREN D. POTTER
TY : TOOLS & TECHNOLOGY
PG : 18
With the cost of research continuing to climb, life
scientists increasingly are looking beyond their own
laboratories for ways to balance their budgets. From their
colleagues in industrial research, many are hearing now
about the cost-saving potential of an approach to their
investigations called design of experiments--DOE for short--
and about the software tools available to automate DOE.
DOE is a way of using statistical principles to identify
what will be the crucial variables in an experiment before
the hands-on work begins. By knowing these variables in
advance, a scientist can create an experiment that will need
fewer runs to complete and will later require less complex
statistical analyses. Even though the experiment and
analysis are simpler, if the DOE approach has worked
correctly, the results yield more useful information than
traditional, ad hoc approaches to experimentation.
"All experiments are designed experiments," says Kinley
Larntz, chairman of the applied statistics department at the
University of Minnesota, St. Paul. "Some of them are just
designed very badly."
The principles of DOE can be applied without computer
assistance, but for large and complex experiments, applying
DOE without a computer can be too time-consuming to be
practical, scientists say. In such cases, it is wise to turn
to software that automates the DOE process (see accompanying
story).
Statistical Help
The ideas behind DOE, at first glance, appear to be nothing
more than good science. And, to a degree, this is true.
"DOE is really just the application of statistical
principles for data collection," Larntz says.
Another, more formal definition of DOE is provided by Doug
Montgomery, a professor of engineering at Arizona State
University in Tempe and author of the textbook Design and
Analysis of Experiments (New York, John Wiley & Sons, 1991):
"A designed experiment introduces systematic changes into
the variables of a system with the objective of discovering
which variables are responsible for the observed changes in
the output."
But when people talk about applying DOE techniques to their
research, it's usually with the goal of obtaining the most
informative data from the minimum number of trials.
"The method is aimed at small experiments where resources
are expensive," explains Larntz. "The goal of small,
expensive experiments with multiple factors is that every
data point you collect is useful. DOE lets you set up the
experiment so that you get a good amount of information from
every point."
Development of the principles behind DOE dates back to the
1920s. Software that automates the designed-experiment
method goes back to the early days of mainframes.
"DOE software systematically looks at all the experimental
factors and levels and picks, out of all the possible
combinations, a small subset," says Larntz. "By working with
this subset, you get predictive abilities from your analysis
to help you predict optimal conditions. Those optimal
conditions may not be conditions that you ever actually
test, and that's the real beauty of the approach. DOE holds
a tremendous potential for scientists."
In the last 10 years or so, as with other software, DOE
programs have migrated from mainframes to personal
computers, becoming available now to most scientists.
"Frankly, anyone who does DOE manually today needs to have
his head examined," says Montgomery. "If you do it manually,
you have to understand more about the theory of statistical
design and more of the operational aspects of the
statistical methods. If you use a computer program, you only
have to understand the basic concepts of experimental
design. The software leads you through the rest."
DOE software uses one of two approaches to lead the
researcher through experiment design. One approach is a
question-and-answer dialogue in which the program asks
certain questions and the user supplies the answers. The
other approach involves a menu structure. The user selects
an item from a main menu, which leads to another, more
specific menu, which leads to another, and so on until the
researcher has provided all the required input. Montgomery
prefers the menu approach.
"I personally don't like the question-and-answer approach
very well," he says. "When you ask someone how many
experiments he wants to run, the answer is `zero.' A
question-and-answer approach often closes off some of the
attractive alternatives. I prefer choosing items from a
well-structured, narrow menu, then having other menus pop up
and guide you as to what to do. You don't want to allow a
sort of a global decision, like how many runs you want, to
be made too early in the game."
DOE software is available from the larger, well-known
statistics software companies such as SAS Institute Inc. of
Cary, N.C., and BBN Software Products of Cambridge, Mass.,
as well as smaller companies that have a DOE package as
their sole product. DOE software from the larger vendors is
usually supplied as a module that works in conjunction with
the company's other statistics products. For example, SAS's
DOE offering is called SAS/QC, and it can be integrated with
the company's broader SAS System for statistics. Similarly,
BBN's RS/Discover works with the company's RS/Series of
statistical software.
Stand-alone DOE software is available from companies such as
Stat-Ease Inc. of Minneapolis, which makes the Design-Ease
and Design-Expert packages. The advantage of stand-alone,
personal-computer-based DOE programs is an affordable price
(Design-Ease costs $395; Design-Expert sells for $795) and
the fact that it's possible to buy just the DOE capabilities
needed without getting a much larger, more comprehensive
statistics system.
The advantage of going with a vendor such as SAS or BBN is
getting a powerful system geared for a large enterprise.
These vendors' products run on a variety of hardware
platforms and also support networking, client/server
computing, and other state-of-the-art computing functions.
Biological Applications
Minnesota's Larntz believes that there should be more
factorial studies, and consequently more DOE, in the
biological sciences. However, as he says, this idea "hasn't
taken off very well" yet.
One of the ideas behind DOE is that it helps the researcher
control variability, which, according to Larntz, could make
DOE particularly useful in life sciences.
"There is lots of variation in the biological sciences,
often more variation relative to response than in physical
sciences," Larntz says. "Because of that variation,
biological research requires larger studies, but the
balanced factorial approach of DOE would work well in this
arena."
Larntz is currently applying DOE principles to a large-
scale, community-based clinical trial of various treatments
for opportunistic diseases related to HIV infection. It is
what he calls a pragmatic design involving real-world
patients and primary-care physicians. Typically, a study
such as this would investigate one treatment per patient.
Larntz's approach will permit multiple treatments on the
patients and investigate the effect of different treatments
in combination with each other.
"That's the idea of a factorial design," he says. "We're
trying to set up an experiment where we are looking at many
things simultaneously, possibly the interactions between the
drugs. These are DOE ideas."
However, while DOE software is available to Larntz, he is
not using it for this study. "It's such a very large
experiment that designed-experiment principles will prevail
without need for any specialized software," he says. "The
typical engineering study has 16 runs. This study has 5,000
patients. There wouldn't be a big gain from optimization
with DOE software."
There are several reasons that some industrial research
areas picked up on DOE before others and before academia.
For one, the nature of some industrial research lends itself
perfectly to DOE.
"In the chemical industry, for example, it is relatively
easy to manipulate factors such as time, temperature, and
concentration," says Mark Anderson, vice president and
general manager at Stat-Ease. "DOE is ideal for finding
optimum formulations, and its payoffs in the chemical
industry are tremendous."
Second, the highly competitive nature of some industries
forced them to turn to an approach--such as DOE--that might
give them an edge. This is particularly true of the
semiconductor industry.
"They got forced into using these tools and techniques
probably earlier than anybody here in the United States
because it was a matter of survival," says Montgomery. "They
had to really figure out how to understand their products
and their processes and how to make them better, faster, and
cheaper."
A third reason is the nature of some academic research,
especially that involving the life sciences.
"The difference between a life science application and an
engineering-based industrial application," explains
Minnesota's Larntz, "is that in a typical large clinical
trial, for example, you do not have many different
treatments. It's commonly a comparison of drug A vs. drug B.
In a typical engineering application, you have time,
pressure, temperature, catalysts, and concentrations--lots
of factors. You can take advantage of DOE to manage those
large factorial designs."
Another characteristic of much life sciences research is
that the studies are quite large. "It's fairly clear how to
design these according to statistical principles without a
computer," Larntz says.
A fourth reason for the relatively minor use of DOE
techniques and DOE software in academic research compared
with industry is simply that many academic researchers have
not received training in this area. In industry, DOE often
falls under the realm of quality control, and with the huge
push for better quality control in the U.S., many industrial
researchers are being exposed to DOE. It is possible to go
through a typical Ph.D. program in many basic science
disciplines and not be exposed to these principles.
Robert Launsby of Launsby Consulting, Colorado Springs,
Colo., tells the story of one client who had gotten a Ph.D.
in organic chemistry and then gone on to start his own
biotechnology company. When he realized the potential DOE
held for his company, he called in Launsby's firm--which
specializes in suggesting ways for industrial clients to use
DOE principles in their experiments--to implement the
approach.
After seeing its success, he thought back on his
dissertation process and said wistfully, "You know, I wish
I'd known about these techniques before I started my
dissertation. I would have done it in half the time and
would have gotten as good or better results."
Caren D. Potter is a freelance science writer based in
McKinleyville, Calif.
----------
WE WELCOME YOUR OPINION. IF YOU WOULD LIKE TO COMMENT
ON THIS STORY, PLEASE WRITE TO US AT EITHER ONE OF THE
FOLLOWING ADDRESSES:
garfield@aurora.cis.upenn.edu
71764.2561@compuserve.com
The Scientist,
3600 Market Street, Suite 450, Philadelphia, PA 19104,
U.S.A.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : STREAMLINING THE EXPERIMENTAL PROCESS
AU : CAREN D. POTTER
TY : TOOLS & TECHNOLOGY
PG : 18
For scientists faced with a large, complex research
investigation, computer programs that bring design-of-
experiment (DOE) ideas to bear on the task can save
considerable time, materials, and aggravation.
Consider the situation faced by Robert Launsby of Launsby
Consulting, Colorado Springs, Colo., on a job he did for a
biomedical-industry client. Launsby's firm specializes in
suggesting ways for industrial clients to use DOE principles
to streamline their experiments. In this case, the task was
to find the best buffering solution for a particular,
expensive enzyme. The challenge was to create, from a list
of hundreds of possible buffers, the most effective solution
for that enzyme.
Relying on experience, the company's scientists were able to
initially narrow the list of buffers. But since a buffer is
placed into solution--of sodium chloride; magnesium;
ethylenediaminetetraacetic acid (EDTA); ethylene glycol-bis-
N, N '-tetraacetic acid (EGTA); or the like--the experiment
would have to investigate enzyme activity not only in the
presence of the different buffers, but also with each buffer
in a different solution. The experimenters would have to
consider buffer A in sodium chloride, magnesium, EDTA, or
EGTA, then buffer B in sodium chloride, magnesium, EDTA, or
EGTA, and so on. And since solutions can be formulated in
different concentrations, the experiment threatened to
become even more complex--buffer A in sodium chloride at a
low concentration would have to be tested, for example, and
then buffer A in sodium chloride again, but at a higher
concentration. Potentially, the client's scientific team was
confronted with a very unwieldy experiment.
"They were making a reagent for a glucose monitoring device
and studying enzyme activity," Launsby explains. "They ended
up with something like 96 possible buffer-solution
combinations to investigate." The company hired Launsby to
apply the principles of DOE to this problem. In the past
four years, Launsby Consulting has helped set up close to
500 experiments using the DOE approach. In this case,
Launsby used a program called RS/Discover from BBN Software
Products, Cambridge, Mass., to implement DOE. The software
identified, from the 96 possible combinations of buffer,
solution, and concentration supplied by the scientists, 12
that would provide sufficient data to determine the best
buffering solution for that particular enzyme.
"We could have applied DOE principles by hand and gotten to
the same 12 combinations, but it's very labor-intensive,"
Launsby says. "With DOE software, you supply some
information--your variables, your levels, your responses--
and the program leads you through the selection of the best
design to meet your needs. The result is an experiment with
the minimum number of runs, as opposed to having to run all
the combinations."
--C.D.P.
----------
WE WELCOME YOUR OPINION. IF YOU WOULD LIKE TO COMMENT
ON THIS STORY, PLEASE WRITE TO US AT EITHER ONE OF THE
FOLLOWING ADDRESSES:
garfield@aurora.cis.upenn.edu
71764.2561@compuserve.com
The Scientist,
3600 Market Street, Suite 450, Philadelphia, PA 19104,
U.S.A.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : SUPPLIERS OF EXPERIMENT DESIGN AND STATISTICAL SOFTWARE
TY : TOOLS & TECHNOLOGY
PG : 20
The following companies offer software tools that aid in the
design of experiments or in statistical analysis of
experiments and data. Please contact the companies directly
for more information concerning specific products.
Abacus Concepts
1918 Bonita Ave.
Berkeley, Calif. 94704
(510) 540-1949
Fax: (510) 540-0260
Advanced Systems Management
1200 S. Acadian
Suite 110
Baton Rouge, La. 70806
(504) 343-7151
Fax: (504) 383-3048
BBN Software Products Corp.
150 Cambridge Park Dr.
Cambridge, Mass. 02140
(617) 873-5000
Fax: (617) 873-4020
BMDP Statistical Software Inc.
1440 Sepulveda Blvd.
Suite 316
Los Angeles, Calif. 90025
(310) 479-7799
Fax: (310) 312-0161
Dionex Corp.
P.O. Box 3603
1228 Titan Way
Sunnyvale, Calif. 94088-3603
(408) 737-0700
Fax: (408) 739-4398
DSP Development Corp.
One Kendall Square
Building 100
Cambridge, Mass. 02139
(617) 577-1133
Fax: (617) 577-8211
Exeter Software
100 N. Country Rd.
Setauket, N.Y. 11733
(516) 689-7838
Fax: (516) 689-0103
Europa Scientific Software Corp.
14 Clinton Dr.
Hollis, N.H. 03049-6595
(603) 595-7415
Fax: (603) 889-2168
Galactic Industries Corp.
395 Main St.
Salem, N.H. 03079
(800) 862-6004
Fax: (603) 898-6228
Graphpad Software
10855 Sorrento Valley Rd.
Suite 203
San Diego, Calif. 92121
(619) 457-3909
Fax: (619) 457-8141
GW Instruments Inc.
35 Medford St.
Somerville, Mass. 02143
(617) 625-4096
Fax: (617) 625-1322
HEM Data Corp.
17336 Twelve Mile Rd.
Suite 200
Southfield, Mich. 48076
(313) 559-5607
Fax: (313) 559-8008
Idea Works
607 Jackson St.
Columbia, Mo. 65203
(314) 875-5827
Fax: (314) 875-5812
Infometrix
2200 Sixth Ave.
Denny Bldg., Suite 833
Seattle, Wash. 98121
(206) 441-4696
Fax: (206) 441-0841
Jandel Scientific
2591 Kerner Blvd.
San Rafael, Calif. 94901
(415) 453-6700
Fax: (415) 453-7782
Keithly Metrabyte
440 Myles Standish Blvd.
Taunton, Mass. 02780
(508) 880-3000
Fax: (508) 880-0179
Labtronics Inc.
95 Crimea St.
Unit 2-C
Guelph, Ontario
N1H 2Y5 Canada
(519) 767-1061
Fax: (519) 836-4431
Manugistics
2115 E. Jefferson St.
Rockville, Md. 20852
(301) 984-5000
Fax: (301) 984-5094
MathSoft Inc.
210 Broadway
Cambridge, Mass. 02139-1901
(617) 577-1017
Fax: (617) 577-8829
MicroCal Software Inc.
1 Roundhouse Plaza
Northampton, Mass. 01060
(413) 586-2013
Fax: (413) 585-0126
Millipore Corp.
80 Ashby Rd.
Bedford, Mass. 01730
(617) 275-9200
Fax: (617) 275-5550
Minitab
3081 Enterprise Dr.
State College, Pa. 16801
(814) 238-3280
Fax: (814) 238-4383
Nicolet Instrument
5225 Verona Rd.
Madison, Wis. 53711-9075
(608) 271-3333
Fax: (608) 276-6222
Omega Engineering Inc.
1 Omega Dr.
Box 4047
Stamford, Conn. 06907
(203) 359-1660
Fax: (203) 359-7640
Research Systems Inc.
2995 Wilderness Place
Suite 203
Boulder, Colo. 80301
(303) 786-9900
Fax: (303) 786-9909
SAS Institute Inc.
SAS Campus Dr.
Cary, N.C. 27513
(919) 677-8000
Fax: (919) 677-8123
Signal Technology
104 W. Anapamuma Dr.
Santa Barbara, Calif. 93116-1950
(800) 235-5787
Fax: (805) 968-2620
Stat-Ease Inc.
2021 East Hennepin Ave.
Minneapolis, Minn.
(612) 378-9449
Fax: (612) 378-2152
Statistical Graphics Corp.
Five Independence Way
Princeton, N.J. 08540
(609) 924-9374
Fax: (609) 452-7792
Statistical Sciences
1700 West Lake Ave. North
Suite 500
Seattle, Wash. 98109
(206) 283-8802
Fax: (206) 283-8691
StatSoft
2325 E. 13th St.
Tulsa, Okla. 74104
(918) 583-4149
Fax: (918) 583-4376
Systat
1800 Sherman Ave.
Evanston, Ill. 60201
(708) 864-5670
Fax: (708) 492-3567
The Math Works Inc.
24 Prime Parkway
Natick, Mass. 01760
(508) 653-1415
Fax: (508) 653-2997
Trinity Software
P.O. Box 960
Main Street
Campton, N.H. 03223
(603) 726-4641
Fax: (603) 726-3781
Visual Numerics Inc.
9990 Richmond Ave.
Suite 400
Houston, Texas 77042
(713) 954-6496
Fax: (713) 781-9260
Waterloo Maple Software
450 Phillips St.
Waterloo, Ontario
N2L 5J2 Canada
(519) 747-2372
Fax: (519) 747-5284
Wolfram Research Inc.
100 Trade Center Dr.
Champaign, Ill. 61820-7237
(217) 398-0700
Fax: (217) 398-0747
----------
WE WELCOME YOUR OPINION. IF YOU WOULD LIKE TO COMMENT
ON THIS STORY, PLEASE WRITE TO US AT EITHER ONE OF THE
FOLLOWING ADDRESSES:
garfield@aurora.cis.upenn.edu
71764.2561@compuserve.com
The Scientist,
3600 Market Street, Suite 450, Philadelphia, PA 19104,
U.S.A.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEW PRODUCTS
------------------------------------------------------------
TI : Unisyn Releases Medium For Growing Hybridomas
TY : NEW PRODUCTS
PG : 21
Unisyn Technologies, based in San Diego, has introduced
Hybrid Grow specialized basal medium for growing hybridomas
in the company's Cell-Pharm hollow-fiber bioreactors. The
medium elevates glucose and glutamine levels to deliver
nutrients to the tissue-dense hollow-fiber hybridoma
cultures. According to Unisyn, Hybrid Grow simplifies
downstream processing and reduces regulatory concerns
because it is free of bovine products. Addition of defined
medium supplements to the product increases production rates
in serum-free environments, the company says. Hybrid Grow
does not contain pherol red, which can interfere with
charged-based separation media, such as ion-exchange gels.
Unisyn notes that Hybrid Grow is produced in a Class 100
clean room in compliance with Food and Drug Administration
Good Manufacturing Practices using water tested against
USPXXII Water-for-Injection standards. It is also dispensed
through filling equipment that sterilizes filling ports
between each use.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : Ashton Pumpmatic Offers Pipetting System Designed
To Reduce Contamination
TY : NEW PRODUCTS
PG : 21
Ashton Pumpmatic Inc. of Dayton, Ohio, offers the Pumpmatic
closed pipetting system, designed to sample and dispense
fluids of an unknown or potentially hazardous nature.
According to the manufacturer, each single-use Pumpmatic is
accurate (0.75 percent), reduces technician exposure to
questionable liquids, and virtually eliminates the risk of
cross-contamination. Available in 1-, 5-, and 10-ml
capacities, Pumpmatics are said to allow rapid, single-
handed sampling and transfers without drips or spills.
Samples can be dispensed rapidly or in single drops. Made of
polystyrene and available in sterile or non-sterile form,
Pumpmatics conform to Occupational Safety and Health
Administration guidelines for pipetting devices.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : Gelman Sciences Introduces Minispike Acrodisc
Filter
TY : NEW PRODUCTS
PG : 21
Minispike Acrodisc syringe filters, from Gelman Sciences
Inc. of Ann Arbor, Mich., allow samples up to 10 ml to be
filtered directly into an instrument vial without sample
runoff that is due to the small size of vial openings. The
syringe filters, when used for high-performance liquid
chromatography and analytical sample preparation, eliminate
the extra step of transferring samples from test tubes to
vials with disposable pipettes.
Minispike Acro-discs are suitable for use with
chromatography and spectroscopy autosampler vials, as well
as nuclear magnetic reson- ance tubes and capillary
electrophoresis vials. The filters are available in four
membrane types: PVDF, nylon, PTFE, and GH Polypro, with
membranes incorporated into a 13-mm polypropylene housing
with a female luer inlet and a Minispike outlet available in
0.2 mm and 0.45 mm.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
------------------------------------------------------------
TI : Database Package From Advanced Imaging Concepts
TY : NEW PRODUCTS
PG : 21
Advanced Imaging Concepts, located in Princeton, N.J., has
introduced Image Central, a user-definable image database
software package designed for image management and
archiving. The Windows-based package can accommodate both
color and monochrome images acquired from scanners, video
cameras, and still digital cameras. Image Central works with
live images or those stored in formats such as TIFF, TGA,
PCX, GIF, and BMP. The package is available in single-user
or network versions for existing PCs or as a full-featured,
turnkey workstation system.
(The Scientist, Vol:8, #7, April 4, 1994)
(Copyright, The Scientist, Inc.)
================================
NEXT:
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TI : Hamamatsu Corp.'s Av |